Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRLLSSILVALSVIFLGYCYFTKKGIFAPAVIHNAEVKIGGDFSLINQDGQVIRSNDFKDKYMMIFFGFSSCKKICPMNLGIISETLAKLDEKTSDKLQTFFITVDPECDSTEKLKEFQQQFDYRIQMLTGERKKIDEVIANYKVYTS-----KVGGEEGINHSSIIYLIGPGGKYVTHFAADLNSDESQS-DKIAAEIKKYINEL
2B7K Chain:D ((20-181))
------------------------------------------LGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVD--ALGRNYDEKTGVDKIVEHVKSY----
General information:
TITO was launched using:
RESULT:
Template:
2B7K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69894 for 1203 contacts (-58.1/contact) +
2D Compatibility (PS) -16878 + (NN) -8171 + (LL) 4900
1D Compatibility (HY) -13200 + (ID) 2900
Total energy: -106143.0 ( -88.23 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_2B7K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B7K-query.scw
PDB file :
Tito_Scwrl_2B7K.pdb
: