Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYVCGPTVYDTAHIGNARSIVVYDVLFQLLKFCYGKATYVRNITDIDDKIINAANEKDSSIESISTYYTRAFHEDMRSINCVEPTHEPKAAENIKYIIELIEYLLQSGHAY----ESNKHIYFSIESYPEYGALSGKKIDELEHGSRVEVGENKKHPG-----DFVLWKPANDTDYKLSSYWNSPWGEGRPGWHIECSAMSYAYLGKDFDIHGGGIDLQFPHHENEIAQNKSAFAGSMFAKYWVHNGSLTVNKEKMSKSLFNIVKVRDLLDSGIKGEVIRYALFKTHYRKPLDWTESVISESQETLNKFYRLLRGIDVASIEKSDVEVSRDFIETLKNDLNIPEALAILHEMAT-KINKTNNENEKLKLTESFIKSARFIGLLESSYQEWFTAGISYQEIKRLIDLRKVAKQNKDYDAADKIRDQLKQMGVTISDNEDGTTTW |
3C8Z Chain:B ((42-408)) | MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLT-LFAERGGDPDRPGKSDQLDALLWR----AERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-------------VLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARW----RSATALPEAPDATDVIARVRQYLADDLDTPKALAALDGWCTDALSYGGHDTESPRLVATTVDALLGVDL------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C8Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -128560 for 2836 contacts (-45.3/contact) +
2D Compatibility (PS) -36391 + (NN) -8641 + (LL) 5984
1D Compatibility (HY) -17600 + (ID) 5600
Total energy: -190808.0 ( -67.28 by residue)
QMean score : 0.560
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