Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKKSGGGSCNGRDSAGCRLGIKKNG--KVIPGNIIVRQRGTKFHPGKNVGMGKDHTIFAKVEGWIRFRKSVNKKTFIDIVPVDNV
1V8Q Chain:A ((20-85))
-------------------RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYVHVRPLA--
General information:
TITO was launched using:
RESULT:
Template:
1V8Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20536 for 431 contacts (-47.6/contact) +
2D Compatibility (PS) -7092 + (NN) -1859 + (LL) -100
1D Compatibility (HY) -6400 + (ID) 1550
Total energy: -37537.0 ( -87.09 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_1V8Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8Q-query.scw
PDB file :
Tito_Scwrl_1V8Q.pdb
: