Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------MITLDGRLVAHKHINVNKGELAHRHSTLAGGKPVLCPVLKVEKGKITYIGNNSEHYKPALANLYNAVKN--------
2KUB Chain:A ((128-208))
ENLDKMISEAEVLNDMAARKLITLD----AEQQLELMKSLVATQSQLEATKNLIGDPNATVADLQIAYTTLGNNTQALGNELIKL
General information:
TITO was launched using:
RESULT:
Template:
2KUB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10950 for 398 contacts (-27.5/contact) +
2D Compatibility (PS) -6704 + (NN) -1912 + (LL) 172
1D Compatibility (HY) 800 + (ID) 550
Total energy: -19144.0 ( -48.10 by residue)
QMean score : 0.064
(partial model without unconserved sides chains):
PDB file :
Tito_2KUB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KUB-query.scw
PDB file :
Tito_Scwrl_2KUB.pdb
: