Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLNKDLVDHDLSDEVCELLPASRHKTYVVKVGQVKIGGNNPIVVQSMALGVHIDSDNVKSSAKRYAKEIIELAHAGSELVRIALNSEEVARAVPYIVEEINKEGFDGKILVGCGQYELDKLVRNYPDNIKMLGKIRINPGNIGFGDKHDEKFERVIEYAITHDIPVRIGVNWGSLDKYLLQKLMDENSLSNNPKSSDVILRKALVMSALNSAQKAEEIGLSLDKIVISCKVSRVQDLISVYTALAKSSNYALHLGLTEAGTGNKGMISTTAGLTYLLQNGIGDTIRASLTQRPGEPRVNEVAVCQEILQSIGLRHFNPQVNSCPGCGRTNSDRFRILTEEVNDYIKIRMPTWKKKNPGVEHMNIAVMGCIVNGPGESKHANLGISLPGYGEKPISAVYKDGKYFKTLQGDNIFEEFKAIIDDYVKEHYT |
2Y0F Chain:D ((5-403)) | ----------------------RRPTPTVYVGRVPIGGAHPIAVQSM---TNTPTRDVEATTA----QVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVP-LVGDFHFNGHLLLRKYPKMAEALDKFRINP----------EHFAEMIRIAMDLGKPVRIGANWGSLDPALLTELMDRNASRPEPKSAHEVVLEALVESAVRAYEAALEMGLGEDKLVLSAKVSKARDLVWVYRELARRTQAPLHLGLTEAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPSPKEPRTKEVEVAQEILQALGLRAFAPEVTSCPGCGRTTSTFFQELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCVVNGPGESKHAHIGISLPGAGEEPKAPVYADGKLLTILKGEGIAEEFLRLVEDYVKTRFA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y0F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199244 for 3169 contacts (-62.9/contact) +
2D Compatibility (PS) -43550 + (NN) -29541 + (LL) 1856
1D Compatibility (HY) -30400 + (ID) 9900
Total energy: -310779.0 ( -98.07 by residue)
QMean score : 0.566
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