Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPIICALDTQDLNEAISLANTLRDKVGMIKLGLEFFAAHGPSGVREVAKCNVPTFLDLKLHDIPNTVAKTVEAIKVLNIEILTLHISGGTKML---EEALSIVKDTKTKLIGVTVLTSMSNEDLSELGIAREVKSQVILFAKLAKKVGLHGIVCSALEAQEVYQECGKDFKIITSGIR-VGFGHDDQKRTATPKEAINSGADYIVIGRPITKSNSPANSAELILKSLS
3LDV Chain:B ((30-254))
---VIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQHLGREFKLVTPGIRPA------QRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEEINSSLV
General information:
TITO was launched using:
RESULT:
Template:
3LDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156914 for 1699 contacts (-92.4/contact) +
2D Compatibility (PS) -23170 + (NN) -8370 + (LL) -332
1D Compatibility (HY) -18400 + (ID) 4750
Total energy: -211936.0 ( -124.74 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_3LDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LDV-query.scw
PDB file :
Tito_Scwrl_3LDV.pdb
: