Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLRIIAGKYRGRRIATGKHLAARPTMSIVREAVFNILSSKKIIYNLNILDLFCGSGSFSFEALSRGAKHAFIVDLDYYNLQLPEKTAKDLGITDSI-TLICCSANA-LPKPVSKCDIVFIDPPYYSNLVNSTLDGLANSGWLSDDALIILEVRKNEDFQCSKNFSVILERTYGIARIIFLSLST
3V8V Chain:B ((541-621))
----------------------------------------------DFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKTLS
General information:
TITO was launched using:
RESULT:
Template:
3V8V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45387 for 542 contacts (-83.7/contact) +
2D Compatibility (PS) -8882 + (NN) -4220 + (LL) 4176
1D Compatibility (HY) -2400 + (ID) 1300
Total energy: -58013.0 ( -107.04 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_3V8V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V8V-query.scw
PDB file :
Tito_Scwrl_3V8V.pdb
: