Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFKEERTMTNYTVDTLNLGKFITESGEVIDNLRLRYEHVGYHGQPLVVVCHALTGNHLTYGTDDYPGWWREIIDGGYIPIHDYQFLTFDVIGSPFGSSSPLNDPHFPKKLTLRDIVRANERGIQALGYDKINILIGGSLGGMQAMELLYNQQFEVDKAIILAATSRTSSYSRAF-N---EI------ARQAIHLGGKEGLSIARQLG-FLTYRSSKSYDERFTPDEVVAYQQHQGNKFKEHFDLNCYLTLLDVLD----SHNIDRGRTDVTHIFKNLETKVLTMGFIDDLLYPDDQVRALGERFKYHRHFFVPDNVGHDGFLLNFSTWAPNLYHFLNLKHFKRK |
| 3AFI Chain:E ((13-311)) | ---------------------------PVLGSSMAYRETGAQDAPVVLFLHGNPTSSH---------IWRNILP--LVS-PVAHCIAPDLIGFGQ-SGKPD-----IA-YRFFDHVRYLDAFIEQRGVTSA-YLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHTEVAEEQDHAEAARAVFRKFRTPG-EGEAMILEANAFVE-RVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIAGEPADVYEALQSAHAALAASSYPKLLFTGEPGALVSPEFAERFAASLTRCALIRLG-AGLHYLQEDHADAIGRSVAGWIAGIEAVR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AFI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -184729 for 2379 contacts (-77.6/contact) +
2D Compatibility (PS) -29680 + (NN) -10590 + (LL) 1156
1D Compatibility (HY) -2800 + (ID) 1700
Total energy: -228343.0 ( -95.98 by residue)
QMean score : 0.467
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