Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTTTQELKQYITRLFQLSNNETWECEALEEAA-ENILPERFINDSPLAHLTLETYT-YYNNELHDLSIYPFLMYANNQLISVGYLNHFDMDFLYLTDTKNTIIDERHLLREGGTHHE
1NVP Chain:D ((15-68))
-------------------------QESLDELIQSQQITPQ------LALQVLLQFDKAINAALAQR-VRNRV-NFRGSLNTYRFCD-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10521 for 191 contacts (-55.1/contact) +
2D Compatibility (PS) -5775 + (NN) -754 + (LL) 4392
1D Compatibility (HY) -1600 + (ID) 450
Total energy: -14708.0 ( -77.01 by residue)
QMean score : 0.006
(partial model without unconserved sides chains):
PDB file :
Tito_1NVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NVP-query.scw
PDB file :
Tito_Scwrl_1NVP.pdb
: