Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVPTVVIDLVDQLKGNYSIKLILEVLNIPKSTYYRWKNKTYKN-----------------DTVTQKVIELCEANHYTYGYRKITALINQCYTSP-----INHKRVQRMMQKHHLNCRVRPKKTTRIGKPYYKTDNLLQR
1PDN Chain:C ((19-124))
-PNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSS-PGMFSWEIREKLIRE-GVCDRSTAPSVSAISRLV------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49404 for 491 contacts (-100.6/contact) +
2D Compatibility (PS) -8748 + (NN) 365 + (LL) 2024
1D Compatibility (HY) -2000 + (ID) 350
Total energy: -58113.0 ( -118.36 by residue)
QMean score : 0.697
(partial model without unconserved sides chains):
PDB file :
Tito_1PDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PDN-query.scw
PDB file :
Tito_Scwrl_1PDN.pdb
: