Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------MENQHNSKLLTLLLIGLAVFIQQSSVIAGVNVSIADFI--------TLLILVYLLFFANHLLKANHFLQFFIILYTYRMIITLCLLFFDDLIFITVKEVLASTVKYAFVVIYFYLGMIIFKLGNSKKVIVTSYIIS-SVTIGLFCIIAGLNKSPLLMKLLYFDEIRSKGLMNDPNYFAMTQIITLVL----AYKYIHNYIFKVLACGILLWSLTTTGSKTAFIILIVLAIYFFIKKLFSRNAVSVVSMLVIMLILLCFTFYNIN--------YYLFQLSDLDAVPSLDRMASIFEEGFASLNDSGSERSVVWINAILVIKYTLGFGVGLVDYVHIGSQINGILLVAHNTYLQIFAEWGILFGALFIIFMLYLLFELFRFNISGKNVTAIVVMLTMLIYFLTVSFNNSRYVAFILGIIVFIVQYEKMERDRNEE |
| 4NM6 Chain:A ((7-451)) | SCRCEGPFYTHLGAGPNVAAIREIMEERFGQKGKAIRIERVIYTGKEGK--SSQGCPIAKWVVRRSSSEEKLLCLVRER--AGHTCEAA--VIVILILVWEGIPLSLADKLYSELTETLRKYGTLTNRRCALNEERTCACQ-----GLDPETCGASFSFGCSWSMYYNGCKFARSKIPRKFKLLGDDPKEEEKLESHLQNLSTLMAPTYKKLAPDAYNNQIEYEHRAPECRLGL-------KEGRPFSGVTACLDFCAHAHRDLHNMQNGSTLVCTLTREDNREFGGKPEDEQLHVLPLYKVSDVDEFGSVEAQEEKKRSGAIQVLSSFRRKVRMLAEPVKTGSDEVWSDS---EQSFLDPDIGGVAVAPTH-------------GSILIECAKRELHATTPLKNPNRNHP----TRISLVFYQHKSMNEPKH------------GLALWEAKMAEK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NM6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -447451 for 2860 contacts (-156.5/contact) +
2D Compatibility (PS) -37563 + (NN) 7474 + (LL) 6156
1D Compatibility (HY) 8000 + (ID) 2850
Total energy: -466234.0 ( -163.02 by residue)
QMean score : 0.106
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