Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIP--------LGFLLGRNRWLYNAIEPLFQLI--RPISPIAWA------PFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDI-EPQYLKIAAN-------------LNLTGWSLYRNILF--PGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE------------------ |
| 2II2 Chain:A ((6-309)) | YGDAIPEVKAILEAKNEEELVTFTSRWSAEERKELRTQFQDTTGLE---FIAFLKKCIKNGPYEDVMALGWDCNISARVNVIKKAMKNVNDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFVDQIPLTSAASYLCHLAIRENRTPRGSVASDAEVLKHNLIDADEPDHEAVVRLIITSTADEYKEINHRFEVLTGKSVQEAIETRYADKENARGLCIAHYYNLAPARAVAYAFHSAVETQN---DDMAYEQAARITGLFHDLHKFAWVHYACWGVMRDDILSRFQSKEANKVNFRDACLMFWKLA |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2II2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -233265 for 1826 contacts (-127.7/contact) +
2D Compatibility (PS) -25348 + (NN) -1340 + (LL) 692
1D Compatibility (HY) 10000 + (ID) 1150
Total energy: -250411.0 ( -137.14 by residue)
QMean score : 0.186
|
|
|