Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKVGIVGGSGYGAIELIRLLQTHP-----HVTIAHIYSHSKVDEPLKLTFPHL----QHIMQHFEALTVDNNDCDVIFFATPAPVSKTCIPPLVEKGIHVIDLSGAFRIKNREIYEAYYKETAAAQDDLNHAIYSISEWQSFDN--NGTKLISNPGCFPTATLLALHPLISEKIVDLSSIIIDAKTGVSGAGRSLSQRVHFSEMNENLSAYAI-GNHKHKPEIEQYLSIIAGQDVSVIFTPHLVPMTRGILSTIYVKFSSEYTTESLHKLMTSY---YANQPFVRIRDIGTFPTTKEVLGSNYCDIGIYVDETTQTAILVSVIDNLVKGASGQAIQNLNILYDFEVTTGLNQSPVYP |
| 2I3A Chain:D ((11-352)) | --KVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDA--VFLALPHGHSAVLAQQLSPETL-IIDCGADFRLTDAAVWERFYGSSHAGSWP-----YGLPELPGARDQLRGTRRIAVPGCYPTAALLALFPALAADLIE-PAVTVVAVSGTSGAGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVTDRDVSVSFTPVLIPASRGILATCTAR-----TRSPLSQLRAAYEKAYHAEPFIYLMPEGQLPRTGAVIGSNAAHIAVAVDEDAQTFVAIAAIDNLVKGTAGAAVQSMNLALGWPETDGLSVVGVAP |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2I3A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -216443 for 2892 contacts (-74.8/contact) +
2D Compatibility (PS) -35049 + (NN) -5410 + (LL) 1508
1D Compatibility (HY) -19200 + (ID) 5850
Total energy: -280444.0 ( -96.97 by residue)
QMean score : 0.447
|
|
|