Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVVNLIMTKERRTFSSEFKLQMVRLY-KNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
2COB Chain:A ((10-58))
-----------RYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2COB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15618 for 293 contacts (-53.3/contact) +
2D Compatibility (PS) -5140 + (NN) -2354 + (LL) 4812
1D Compatibility (HY) -1200 + (ID) 350
Total energy: -19850.0 ( -67.75 by residue)
QMean score : 0.727
(partial model without unconserved sides chains):
PDB file :
Tito_2COB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2COB-query.scw
PDB file :
Tito_Scwrl_2COB.pdb
: