Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMIIAIVQDQDSQELADQLVKNNF-RATKLATTG-G--------FL--R-----AGNTTFLCGVNDDRVDEILSVINQTCGNREQLVSPITPMGGSADSYIPYPVEVEVGGATVFVMPVDAFHQF
3NCQ Chain:A ((1-101))
MKKIEAIVRAEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFT-G-----------------------SPGDGKIFIIPVEDVVR-
General information:
TITO was launched using:
RESULT:
Template:
3NCQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56885 for 536 contacts (-106.1/contact) +
2D Compatibility (PS) -9341 + (NN) -4587 + (LL) 1140
1D Compatibility (HY) -5600 + (ID) 1150
Total energy: -76423.0 ( -142.58 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_3NCQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NCQ-query.scw
PDB file :
Tito_Scwrl_3NCQ.pdb
: