Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
1AD4 Chain:B ((1-266))
-TKTKIMGILNVT-----------NVESAVTRVKAMMDEGADIIDVGGV-------MITVEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLGVDIINDQWAGLYDHRMFQVVAKYDAEIVLMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNFS
General information:
TITO was launched using:
RESULT:
Template:
1AD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130800 for 2090 contacts (-62.6/contact) +
2D Compatibility (PS) -27534 + (NN) -20920 + (LL) -276
1D Compatibility (HY) -35600 + (ID) 11900
Total energy: -227030.0 ( -108.63 by residue)
QMean score : 0.765
(partial model without unconserved sides chains):
PDB file :
Tito_1AD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AD4-query.scw
PDB file :
Tito_Scwrl_1AD4.pdb
: