Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNYGIPQNAIITIAGTVGVGKSTLTQALADKLNFKTSFENVEHNPYLDKFYSDFERWSFHLQIYFLAERFKEQKRMFEYGGGFVQDRSIYEDVDIFAKMHEEEGTMSKEDFKTYSDLFNAMVMTPYFPKP--DVMIYLECNYDEVIDRIIERGREMEINTDPEYWKKLFKRYDDWINSFNACPVVRININEYDIHKDPESLNPMIDKIARIIQTYRQVDTR
2JAS Chain:F ((4-169))
-----------IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQA-KNLENIIFDRTLLED-PIFMKVNYDLNNVDQTDYNTYIDFYNNVVLEN-----SFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEF----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JAS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40364 for 1118 contacts (-36.1/contact) +
2D Compatibility (PS) -16853 + (NN) -4075 + (LL) 3948
1D Compatibility (HY) -14800 + (ID) 2900
Total energy: -75044.0 ( -67.12 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_2JAS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAS-query.scw
PDB file :
Tito_Scwrl_2JAS.pdb
: