Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MRLQKAPLVTSGLV--LGLLGLGNLLK----DLSL---TLNAVCGIFAFLIWI------HLLCTMIK-------YFNNVKEQLNSPLVSSVFTTFFMSGF-LGTTYLNTFFSNITFIN----SLITPI-WILCLVGIMTHMIIFSIKYLKDFSLENVYPS-----WTVLFIGIAIAGLTAPVSGCFFIGQLTVIYGFVATCIVLPIVFKR---LKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKENQDKFLRNASQ |
| 2YQ2 Chain:A ((2-333)) | TGCKPEYYYAIAKNDRIGPLGAEGLTTVWKDYSPEMTLEDTMVIASCRDGKFMYLSRCTRETRYLAILHSRALPTSVVFKKLFEGQKQGDTVEMDDDFEFGLCPCDAKPIVRGKYNTTLLNGPAFQMVCPIGWTGTVSCMLANRDTLDTAVVRTYRRSRPFPYRQGCITQKVLGEDLYDCILGGNWTCVTGDQLQYSGGSIESCKWCGFKFQRSEGLPHYPIGKCRLKNETGYRLVDNTSCNREGVAIVPQGTVKCKIGDTTVQVIA-----LDTKLGPMPCKP------YEIISSEGPVEKTACTFNYTKTLKNKYF-----------EPRDSYFQQYMLKGEYQYWFDLEVT |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YQ2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -251076 for 1817 contacts (-138.2/contact) +
2D Compatibility (PS) -30824 + (NN) 9220 + (LL) 3272
1D Compatibility (HY) -5200 + (ID) 2100
Total energy: -276708.0 ( -152.29 by residue)
QMean score : -0.011
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