Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLINKKNTINNYNEELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYP----DPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLSEE
4Q9O Chain:B ((12-240))
----------------------QVPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRPDQEVKFIMNLPVEFYDNYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRRH---------
General information:
TITO was launched using:
RESULT:
Template:
4Q9O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109711 for 1812 contacts (-60.5/contact) +
2D Compatibility (PS) -23842 + (NN) -6223 + (LL) 1520
1D Compatibility (HY) -21600 + (ID) 6050
Total energy: -165906.0 ( -91.56 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_4Q9O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q9O-query.scw
PDB file :
Tito_Scwrl_4Q9O.pdb
: