Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTTVLFVGLGLIGGSLASNIKYHNPNTNIIAYDADTSQLDKAKSIGIINEK--CLNYSEAIKKADVIIYATPVAITNKYLSELIDMPTKPGVIVSDTGSTKAMIQQHESNLLKHNIHLVSGHPMAGSHKSGVLNAKKHLFENAYYILVYNEP-RN-------EQAANTLKELLSPTLAKFIVTTAEEHDYVTSVVSHLPHIVASSLVHVSQKNGQEHHLVNKLAAGGFRDITRIASSNAQMWKDITLSNKTYILEMIRQLKSQFQDLERLIESNDSEKLLSFFAQAKSYRDALPAKQLGGLNTAYDLYVDIPDESGMISKVTYIMSLHNISISNLRILEVREDIYGALKISFKNPTDRERGMQALSDFDCYIQ |
| 3KTD Chain:A ((8-339)) | SRPVCILGLGLIGGSLLRDLHAA--NHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLDAVHT-HA-PNNGFTDVVSVKTAVYDAVKARN-MQHRYVGSHPMAGTA-SGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAETLAIVGDN---GGALSLSLAAGSYRDSTRVAGTDPGLVRAMCESNAGPLVKALDEALAILHEAREGLTAEQ-PNIEQLADNGYRSRIRYEARS-GQ--SSRPVLRLHPGTPNWEKQL-IHAETLGARIE---------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99028 for 2420 contacts (-40.9/contact) +
2D Compatibility (PS) -33358 + (NN) -14516 + (LL) 3184
1D Compatibility (HY) -8800 + (ID) 3200
Total energy: -155718.0 ( -64.35 by residue)
QMean score : 0.396
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