Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKKSVRHIKIREIISNEQIETQDELVKRLNDYDLNVTQATVSRDIKELQLIKVPIPSGQYVYSLPNDRKFHPLEKLGRYLMDSFVNIDGTDNLLVLKTLPGNAQSIGAILDQINWEEVLGTICGDDTCLIICRSKEASDEIKSRIFNLL
2P5M Chain:B ((5-83))
-----------------------------------------------------------------------NPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNRLLELL
General information:
TITO was launched using:
RESULT:
Template:
2P5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64400 for 575 contacts (-112.0/contact) +
2D Compatibility (PS) -8699 + (NN) -1409 + (LL) 5296
1D Compatibility (HY) -12000 + (ID) 2250
Total energy: -83462.0 ( -145.15 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_2P5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P5M-query.scw
PDB file :
Tito_Scwrl_2P5M.pdb
: