Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ
3W34 Chain:B ((8-196))
-----VIGIAGGTASGKTTLAQALARTL-GERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEM------------
General information:
TITO was launched using:
RESULT:
Template:
3W34.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67436 for 1468 contacts (-45.9/contact) +
2D Compatibility (PS) -20471 + (NN) -9373 + (LL) 1820
1D Compatibility (HY) -19600 + (ID) 5000
Total energy: -120060.0 ( -81.78 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_3W34.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W34-query.scw
PDB file :
Tito_Scwrl_3W34.pdb
: