Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKLVVGS-RRSKLALTQSQQFINKLKAVEPNLEIEIKEIVTKGDRIV----DKQLSKVGGKGLFVKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTH---TPLSQLPEGSIIGTSSLRRGAQILSKY--PNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDDIVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGSCQVPIAGYATISDQKEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEIIKRLNEQH |
| 2VD3 Chain:A ((3-162)) | -PKIRIAVPSKGRISE---P-AIRLLENA--GVGLKD--TVNRKLFSKTQHPQIEVMFSR----A-ADIPEFVADGAADLGITGYDLIVE-RGSDVEILEDLKYGRASLVLAAPEDSTIRGPEDIPRGAVIATEFPGI---TENYLREHGIDAEVVELTG-STEIAPFIGVADLITDLS------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VD3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -33217 for 1037 contacts (-32.0/contact) +
2D Compatibility (PS) -16096 + (NN) -5907 + (LL) 9712
1D Compatibility (HY) 1200 + (ID) 650
Total energy: -44958.0 ( -43.35 by residue)
QMean score : 0.396
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