Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKVIGLTGGIASGKSTVSELLSVFGFKVVDADKAAREAVKKGSKGLAQVREVFGDEAIDENGEMNRRYMGDLVFNHPEKRLELNAIIHPIVRDIMEEEKQEYLKQGYNVIMDIPLLFENELENTVDEVWVVYTSESIQMDRLMQRNNLSLEDAKARVYSQISIDKKSRMADHVIDNLGDKLELKQNLERLLEEEGYIEKPNYGEED
1VIY Chain:B ((6-191))
---IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQ--QETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARL----------------
General information:
TITO was launched using:
RESULT:
Template:
1VIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48205 for 1361 contacts (-35.4/contact) +
2D Compatibility (PS) -20299 + (NN) -4933 + (LL) 872
1D Compatibility (HY) -10400 + (ID) 3200
Total energy: -86165.0 ( -63.31 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1VIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIY-query.scw
PDB file :
Tito_Scwrl_1VIY.pdb
: