Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDNSTKYLLYIQTATSNHLETNCVFLHCDYILKVPIN---------------KLVSYYAKLHLSSQSVLIETAKNILNINKLVPIYINPKTILFPLKHKRAP-------IQIYINAHYIVGMTAIENSTLIHFQEGIQLEVD--------EPFSLVSKKCHESLALKHFIENTISN
1JFM Chain:A ((1-174))
-DAHSLRCNLTIKDPTPADPLWYEAKCFVGEILILHLSNINKTMTSGDPGETANATEVKKCLTQPLKNLCQKLRNKVSNTKVDTHKTNGYPHLQVTMIYPQSQGRTPSATWEFNISDSYFFTFYTENMSWRSANDESGVIMNKWKDDGEFVKQLKFLIHECSQ--KMDEFLKQSKEK
General information:
TITO was launched using:
RESULT:
Template:
1JFM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83190 for 1030 contacts (-80.8/contact) +
2D Compatibility (PS) -15544 + (NN) -1735 + (LL) 356
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -102413.0 ( -99.43 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_1JFM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JFM-query.scw
PDB file :
Tito_Scwrl_1JFM.pdb
: