Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKRLFISRVILIFALILVISTPNVLAESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
3BZD Chain:B ((2-235))
----------------------------SQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVW--WHGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTK--
General information:
TITO was launched using:
RESULT:
Template:
3BZD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42987 for 1788 contacts (-24.0/contact) +
2D Compatibility (PS) -25685 + (NN) -14553 + (LL) 3476
1D Compatibility (HY) -32000 + (ID) 11550
Total energy: -123299.0 ( -68.96 by residue)
QMean score : 0.727
(partial model without unconserved sides chains):
PDB file :
Tito_3BZD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BZD-query.scw
PDB file :
Tito_Scwrl_3BZD.pdb
: