Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFNQSYLNVYFICGTSDVPSHRTIHEVLEAALKAGITLFQFREKGESALKGNDKLVLAKELQHLCHQYDVPFIVNDDVSLAKEINADGIHVGQDDAKVKEIAQYFTDKIIGLSISDLDEYAKSDLTHVDYIGVGPIYPTPSKHDAHIPVGPEMIATFKEMNPQLPIVAIGGINTNNVAPIVEAGANGISVISAISKSENIEKTVNRFKDFFNN
1G4T Chain:B ((15-218))
---KELLSVYFIMGSNNTKADPVT--VVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFRE----
General information:
TITO was launched using:
RESULT:
Template:
1G4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153882 for 1741 contacts (-88.4/contact) +
2D Compatibility (PS) -23059 + (NN) -19888 + (LL) 512
1D Compatibility (HY) -14000 + (ID) 4400
Total energy: -214717.0 ( -123.33 by residue)
QMean score : 0.631
(partial model without unconserved sides chains):
PDB file :
Tito_1G4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4T-query.scw
PDB file :
Tito_Scwrl_1G4T.pdb
: