Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGH-FAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
1VHW Chain:E ((5-233))
----TPHINAQMGDFADVVLMPGDPLRAKYIAENFLDNAVQVCDVRNMFGYTGTYKGRRISVMGHGMGIPSCSIYVTELIKDYGVKKIIRVGSCGAVNEGIKVRDVVIGMGACTDSK-VNRIRFKDHDFAAIADYKMVKAAEEAAKARGIDVKVGNLFSAELFYTPDPSMFDVMDKYGIVGVEMEAAGIYGVAAEYGAKALAICTVSDHIKTGEQTTSEERQNTFNEMIEIALD---
General information:
TITO was launched using:
RESULT:
Template:
1VHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142726 for 2007 contacts (-71.1/contact) +
2D Compatibility (PS) -24202 + (NN) -6738 + (LL) 696
1D Compatibility (HY) -24000 + (ID) 6200
Total energy: -203170.0 ( -101.23 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_1VHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHW-query.scw
PDB file :
Tito_Scwrl_1VHW.pdb
: