Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAKEIRDLTTSEIEEQIKSSKEELFNLRFQLAT-GQLEETARIRTVRKTIARLKTVAREREIEQSKANQ
1VQ8 Chain:V ((4-66))
LHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGD-------
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4000 for 355 contacts (-11.3/contact) +
2D Compatibility (PS) -6809 + (NN) -2149 + (LL) 444
1D Compatibility (HY) -2000 + (ID) 1250
Total energy: -15764.0 ( -44.41 by residue)
QMean score : 0.829
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: