Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVLGMLNKEPLTISEITQRQGVNKAAVSRRIKKLIDAKLVKLDKPNLNIDQRLKFITLTDKGRAYLKERNAIMTDIAQDITNDLNSEDIENVRQVLEVINHRIKTYSNHK
4KDP Chain:E ((1-149))
MVRRIEDHISFLEKFINDVNTLTAKLLKDLQTEYGISAEQSHVLNMLSIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAIMSHIASDMTSDFDSKEIEKVRQVLEIIDYRIQSYTS--
General information:
TITO was launched using:
RESULT:
Template:
4KDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34849 for 861 contacts (-40.5/contact) +
2D Compatibility (PS) -15640 + (NN) -4311 + (LL) 108
1D Compatibility (HY) -18400 + (ID) 4700
Total energy: -77792.0 ( -90.35 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_4KDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KDP-query.scw
PDB file :
Tito_Scwrl_4KDP.pdb
: