Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPSSLGLEPWKFVVIQDQALRDELKAHSWGAAKQLD----TASHFVLIFARKNVTSRSPY---VQHMLRDIKKYEAQTIPAVEQKFDAFQADFHISDNDQALYDWSSKQTYIALGNMMTTAALLGIDSCPMEGFSLDTVTDILANKGILDTEQFGLSVMVAFGYRQQDPPKN----KTRQAYEDVIEWVGPKE
1V5Z Chain:B ((11-214))
--------------RYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHD-SFANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQK----EAAFASFKFVELNCDENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFAD----ELKGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVI-------
General information:
TITO was launched using:
RESULT:
Template:
1V5Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52138 for 1359 contacts (-38.4/contact) +
2D Compatibility (PS) -20661 + (NN) -8428 + (LL) 2212
1D Compatibility (HY) -11600 + (ID) 3500
Total energy: -94115.0 ( -69.25 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_1V5Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V5Z-query.scw
PDB file :
Tito_Scwrl_1V5Z.pdb
: