Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKEKMLAEKWYDANFDQDLINERARAKDICFELNHTKPSDTNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFYHRNEGYEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDLPSETLNDETIK
3V4E Chain:B ((4-191))
MTEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDL-----------
General information:
TITO was launched using:
RESULT:
Template:
3V4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105214 for 1486 contacts (-70.8/contact) +
2D Compatibility (PS) -20777 + (NN) -13304 + (LL) 432
1D Compatibility (HY) -24800 + (ID) 9150
Total energy: -172813.0 ( -116.29 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_3V4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V4E-query.scw
PDB file :
Tito_Scwrl_3V4E.pdb
: