Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQEILNVEGMSCGHCKSAVESALNNIDGVTSADVNLENGQVSVQYDDSKVAVSQMKDAIEDQGYDVV
2GGP Chain:B ((5-65))
----ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDN-EVTADSIKEIIEDCGFD--
General information:
TITO was launched using:
RESULT:
Template:
2GGP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29229 for 371 contacts (-78.8/contact) +
2D Compatibility (PS) -6684 + (NN) -2221 + (LL) 760
1D Compatibility (HY) -7200 + (ID) 1150
Total energy: -45724.0 ( -123.25 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_2GGP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GGP-query.scw
PDB file :
Tito_Scwrl_2GGP.pdb
: