Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRTMMNAKIHRARVTESNLNY-VGSITIDSDILEAVDILPNEKVAIVNNNNGARFETYVIAGERGSGKICLNGAASRLVEVGDVVIIMTYAQLNEEEIKNHAPKVAVMNEDNVIIEMIHEKENTIVL
1PYQ Chain:B ((18-130))
MIRTMLQGKLHRVKVTHADLHYEAGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDN---------------
General information:
TITO was launched using:
RESULT:
Template:
1PYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79396 for 825 contacts (-96.2/contact) +
2D Compatibility (PS) -12619 + (NN) -3344 + (LL) 1976
1D Compatibility (HY) -10400 + (ID) 2700
Total energy: -106483.0 ( -129.07 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_1PYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PYQ-query.scw
PDB file :
Tito_Scwrl_1PYQ.pdb
: