Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
2VED Chain:B ((42-269))
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGMSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTD--
General information:
TITO was launched using:
RESULT:
Template:
2VED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100460 for 1918 contacts (-52.4/contact) +
2D Compatibility (PS) -25568 + (NN) -20251 + (LL) 76
1D Compatibility (HY) -30400 + (ID) 11300
Total energy: -187903.0 ( -97.97 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_2VED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VED-query.scw
PDB file :
Tito_Scwrl_2VED.pdb
: