Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYQKQRNTAETQLNISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQRVPSSKGVIE
2AE8 Chain:E ((31-208))
-IYQKQRN----QLNISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQ-----DDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTAT-------------
General information:
TITO was launched using:
RESULT:
Template:
2AE8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162239 for 1394 contacts (-116.4/contact) +
2D Compatibility (PS) -18038 + (NN) -7214 + (LL) 1088
1D Compatibility (HY) -25200 + (ID) 8450
Total energy: -220053.0 ( -157.86 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_2AE8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AE8-query.scw
PDB file :
Tito_Scwrl_2AE8.pdb
: