Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MILKSSIDRLLQTIDIVEVISSYVDLRKSGSNYMACCPFHEERSASFSVNQVKGFYYCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIALEYDKGVYYDHKEDYHLLEMVSSLYQEELFN--APFFLNYLQKRGLSMESIKAFKLGLCTNKIDYGIENKG---LNKDKLIELGVLGKSDKEDKTYLRFLDRIMFPIYSPSAQVVGFGGRTLKEKAAKYINSPQNKLFDKSSLLYGYHLAKEHIYKQKQVIVTEGYLDVILLHQAGFKNAIATLGTALTPSHLPLLKKGDPEILLSYDGDKAGRNAAYKA---SLMLAKEQRKGGVILFENNLDPADMIANHQIETLKNWLSRPIAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNFSLLLQNEYKPLIATLLQAPLHVLGIREPVSFQPFYPKTEKPNRPQKFAHVSSMPSLEFLEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQEKLDDPKLVALLLDANLPLKKGGFEKELRLLILRYFERQLKEIPKSPLSFSEKMIFLKRARQAIMKLKQGELVAI |
| 3B39 Chain:B ((10-278)) | -----------------------------------------------------------------------------------------------------------YQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTND-QGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWCALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNK------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3B39.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143794 for 2048 contacts (-70.2/contact) +
2D Compatibility (PS) -27866 + (NN) -10844 + (LL) 20516
1D Compatibility (HY) -19600 + (ID) 4350
Total energy: -185938.0 ( -90.79 by residue)
QMean score : 0.414
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