Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFEMLYSKIHRATITDANLNY-IGSITIDEDLAKLAKLREGMKVEIVDVNNGERFSTYVILGKKRGK-ICVNGAAARKVAIGDVVIILAYASMNEDEINTHKPSIVLVDEKNEILEKG
1PYQ Chain:B ((18-132))
MIRTMLQGKLHRVKVTHADLHYEAGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK---
General information:
TITO was launched using:
RESULT:
Template:
1PYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83089 for 827 contacts (-100.5/contact) +
2D Compatibility (PS) -12461 + (NN) -1167 + (LL) 344
1D Compatibility (HY) -7600 + (ID) 2150
Total energy: -106123.0 ( -128.32 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_1PYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PYQ-query.scw
PDB file :
Tito_Scwrl_1PYQ.pdb
: