Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MNAHKERLESNLLELLQEALAS-LNDSELNS-LSVTKVECSKGKHHALVFV-------LSSDHKILSKLKKAEGLIRQFVLQASGWFKCPKLSFVLDDSLEKQLRLDAIFNEIAKGKDND
1KKG Chain:A ((1-108))
MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMR---------------
General information:
TITO was launched using:
RESULT:
Template:
1KKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42998 for 600 contacts (-71.7/contact) +
2D Compatibility (PS) -10584 + (NN) -5934 + (LL) 676
1D Compatibility (HY) -6800 + (ID) 1200
Total energy: -66840.0 ( -111.40 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_1KKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KKG-query.scw
PDB file :
Tito_Scwrl_1KKG.pdb
: