Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNGSNHMKNKTLVISGATRGIGKAILYRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYPLNVLEPEQYTELFKQVDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWLTGQTIVVDGGTTFK |
3OID Chain:C ((4-248)) | --------NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIE-KLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNA------ASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVS-SKADMIRGQTIIVDGGRSLL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3OID.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -126688 for 2161 contacts (-58.6/contact) +
2D Compatibility (PS) -26770 + (NN) -9976 + (LL) 788
1D Compatibility (HY) -16400 + (ID) 4900
Total energy: -183946.0 ( -85.12 by residue)
QMean score : 0.598
|
|
|