Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTMNAIRWPKKWIPGETDNFVSNEVIVKGLDFNKVVQHLRDASHWEKYYKNSGNIHMYHQDNTILKDKTRFCFETF-GF---LVEAEVEEFELKDAILRLAWRGWNEAKGDEYL-EVYHAWLVEKLDN---DRVRILTQESQSGVPAKALAKSVPNAMLNGHQAWLDGLVAYSR
3RT2 Chain:A ((11-172))
---SEYIKKHHRHELVESQCSSTLVK-HIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQG---KKLEVGSVREVDLKSGLPATKSTEVLEILDDN--EHILGIRIVGGD---HRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPE-GNTKEETCFFVEALIQCNLNSLADVTE
General information:
TITO was launched using:
RESULT:
Template:
3RT2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33798 for 1140 contacts (-29.6/contact) +
2D Compatibility (PS) -16070 + (NN) 2224 + (LL) 508
1D Compatibility (HY) 3200 + (ID) 750
Total energy: -44686.0 ( -39.20 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_3RT2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RT2-query.scw
PDB file :
Tito_Scwrl_3RT2.pdb
: