Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQAKIKNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIRSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK
4A7X Chain:D ((7-240))
------NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKD------AKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK
General information:
TITO was launched using:
RESULT:
Template:
4A7X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -182600 for 1926 contacts (-94.8/contact) +
2D Compatibility (PS) -24780 + (NN) -8726 + (LL) 768
1D Compatibility (HY) -34000 + (ID) 11350
Total energy: -260688.0 ( -135.35 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_4A7X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4A7X-query.scw
PDB file :
Tito_Scwrl_4A7X.pdb
: