Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKNKPTECPAGEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYAPKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDNTPLNKTRFKSHYELAANRAYRVMKVLIQYGVDPNQLSFSSYGSTNPIAPNDSLENRMKNNRVEIFFSTDANDLSKIHSILDEEFNPHKQQE
3S0W Chain:B ((22-180))
---------------------------------------------------------------------------------------------TETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQLSFSSYGSTNPIAPNDSLENRMKNNRVEIFFSTDANDLSKIHSILDNEFNP-----
General information:
TITO was launched using:
RESULT:
Template:
3S0W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60023 for 1128 contacts (-53.2/contact) +
2D Compatibility (PS) -17873 + (NN) -15165 + (LL) 7172
1D Compatibility (HY) -20400 + (ID) 7650
Total energy: -113939.0 ( -101.01 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3S0W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S0W-query.scw
PDB file :
Tito_Scwrl_3S0W.pdb
: