Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSHYIELTEENFESTIKKG--VALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLLG
2YNX Chain:B ((4-106))
----VQLNDENFDEVIKKNNKVVVVDFWAEWCGPCRMIAPIIEELAKEYAGKVVFGKLNVDENPEIAAKYGIMSIPTLLFFKNGKVVDQLVGAMPKEALKERIKKYL-
General information:
TITO was launched using:
RESULT:
Template:
2YNX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70155 for 721 contacts (-97.3/contact) +
2D Compatibility (PS) -10568 + (NN) -3015 + (LL) 144
1D Compatibility (HY) -12800 + (ID) 2950
Total energy: -99344.0 ( -137.79 by residue)
QMean score : 0.753
(partial model without unconserved sides chains):
PDB file :
Tito_2YNX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YNX-query.scw
PDB file :
Tito_Scwrl_2YNX.pdb
: