Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDANCLKLMFVAGSQDFYHIKGDRTNALLDTLELALQSKITAFQFRQKGDLALQDPVEIKRLALECQKLCKKYGTPFIINDEVRLALELKADGVHVGQEDMAIEEVVTLCQKRLFIGLSVNTLEQALKARHLDHIAYLGVGPIFPTPSKKDAKEVVGVNLLKKIHDSGVEKPLIAIGGITTDNASKLQKFS--GIAVISAITQAKDKALAVEKLLKNA
1G4T Chain:B ((18-216))
------LSVYFIMGSNN---TKAD----PVTVVQKALKGGATLYQFREKGGDALTGEARIK-FAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGD-MILGVSAHTMSEVKQAEE-DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEI
General information:
TITO was launched using:
RESULT:
Template:
1G4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148192 for 1652 contacts (-89.7/contact) +
2D Compatibility (PS) -21633 + (NN) -16691 + (LL) 1244
1D Compatibility (HY) -12000 + (ID) 4100
Total energy: -201372.0 ( -121.90 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_1G4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4T-query.scw
PDB file :
Tito_Scwrl_1G4T.pdb
: