Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVYPQVLSIAGSDSGGGAGIQADLKAFQTFGVFGTSVITCITAQNTQGVHGVYPLSVESVKAQILAIRDDFSIKAFKMGALCNAQIIECVANALETCDFGLCVLDPVMVAKNGALLLEEEAILSLKKRLLPKTNLLTPNLPEVYA-LTGVQARDDKSASKAMGVLRDLGVKNAVIKGGHTEHFQGEFSNDWVFLEDAEFILSAKRFNTKNTHGTGCTLSSLIVGLLAQGLDLKNAITKAKELLTIII--QNPLNIGHGHGPLNLWSIKKHV
1JXH Chain:B ((29-282))
-------LTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAENTCGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRHHVRNVVLDTVML------LLSPSAIETLRVRLLPQVSLITPNLPEAAALLDAPHARTEQEMLAQGRALLAMGCEAVLMKG------------DWLFTREGEQRF---RVNTKNTHGTGCTLSAALAALRPRHRSWGETVNEAKAWLSAALAQADTLEVGKGIGPVHHFHAWW--
General information:
TITO was launched using:
RESULT:
Template:
1JXH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170566 for 2007 contacts (-85.0/contact) +
2D Compatibility (PS) -25253 + (NN) -9489 + (LL) 1796
1D Compatibility (HY) -16000 + (ID) 4900
Total energy: -224412.0 ( -111.81 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_1JXH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JXH-query.scw
PDB file :
Tito_Scwrl_1JXH.pdb
: