Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHEYSVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGNEMRLLSLEMLAE
1LKO Chain:A ((98-185))
------YTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKEGR-VFLR------EQATKWRCRNCGYVHEGT-GAPELCPACAHPKAHFELLGINW---------
General information:
TITO was launched using:
RESULT:
Template:
1LKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9710 for 493 contacts (-19.7/contact) +
2D Compatibility (PS) -9295 + (NN) 198 + (LL) 2380
1D Compatibility (HY) -4800 + (ID) 650
Total energy: -21877.0 ( -44.38 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_1LKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LKO-query.scw
PDB file :
Tito_Scwrl_1LKO.pdb
: