Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENVYHKSLPKPLIYDLGCSTGNFFIALNQQIQQD-IELVGIDNSMPMLKKAQEKLKDF---NNVRFECMDFLEVKFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVARKT
4IWN Chain:B ((2-225))
---------------FDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQ--------PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRHHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHNAGFEHSELWFQCFNFGSLVALKA
General information:
TITO was launched using:
RESULT:
Template:
4IWN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152762 for 1806 contacts (-84.6/contact) +
2D Compatibility (PS) -23769 + (NN) -8503 + (LL) 1564
1D Compatibility (HY) -17200 + (ID) 3850
Total energy: -204520.0 ( -113.24 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_4IWN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IWN-query.scw
PDB file :
Tito_Scwrl_4IWN.pdb
: