Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTNGLFKMWGLFLVLIALVFNACSDSHKEKKDALEVIKQRGVLKVGVFSDKPPFGSVDSKGNYQGYDVVIAKRMALDLLGDENKIEFIPVEASARVEFLKANKVDIIMANFTRTKEREKVVDFANPYMKVALGVIS-KDGVIKNIEELKDKELIVNKGTTADFYFTKNYPNIKLLKFEQNTETFLALLNNKAIALAHDNTLLLAWVKQHPEFKLGITSLGDKDVIAPAIKKGNPKLLEWLNNEIDSLISSDFLKEAYQETLEPIYGDGIKPEEIIFE
2YJP Chain:C ((46-291))
--------------------------------ATVAAIKEKGVIRIGVFGDKPPFGYVDANGKNQGFDVEIAKDLAKDLLGSPDKVEFVLTEAANRVEYVRSGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNKPITDMAQLKDQTLLVNKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLLPVYGEKVKPEALLAE
General information:
TITO was launched using:
RESULT:
Template:
2YJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148439 for 2086 contacts (-71.2/contact) +
2D Compatibility (PS) -26708 + (NN) -13801 + (LL) 2664
1D Compatibility (HY) -24000 + (ID) 6700
Total energy: -216984.0 ( -104.02 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_2YJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YJP-query.scw
PDB file :
Tito_Scwrl_2YJP.pdb
: