Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELGFLGHYHPILLPLESRIKNEFLHLGLSGANVTLPFKERAFQICDKIKGIALECASVNTLVLENDELVGYNTDALGFYLSLKHQNYQNDQNALILGAGGSAKALACGLQKQGLKVSVLNRSARGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKESKLAYDLAYGFLTPFLSLAKELKIPFQDGKDMLIYQASLSFEKFSDSQIPYSKAFEVMRSVF
3PHI Chain:B ((1-262))
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIKGIALECGAVNTLVLENDELVGYNTDALGFYLSLK---YQN---ALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSV-
General information:
TITO was launched using:
RESULT:
Template:
3PHI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -205963 for 2312 contacts (-89.1/contact) +
2D Compatibility (PS) -27077 + (NN) -6182 + (LL) 180
1D Compatibility (HY) -40000 + (ID) 12250
Total energy: -291292.0 ( -125.99 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3PHI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PHI-query.scw
PDB file :
Tito_Scwrl_3PHI.pdb
: